PhD Scholarship in Bioinformatics at Stockholm University

Stockholm University, Sweden is inviting excellent students to apply for a PhD position in molecular biology. Successful candidate will have funding to work and study for four years in Sweden. The deadline to apply is August 16, 2020.

Science for Life Laboratory (SciLifeLab) is a national center for large-scale life science research with an advanced technological infrastructure. SciLifeLab performs multidisciplinary research based on DNA sequencing, gene expression analysis, proteomics, bioinformatics, biostatistics and systems biology. The aim is to enable Swedish researchers to analyze genes, transcripts and proteins in different organisms in order to clarify molecular mechanisms related to health and the environment.

Examples of thematic research areas currently being processed within SciLifeLab are clinical genomics/proteomics, cancer genomics, complex genomics, and ecological and environmental-related genomics. Bioinformatics and systems biology are key activities within the center, and a significant part of SciLifeLab’s staff work in these areas.

The goal of the project is to develop and apply methods for inference of accurate and predictive gene regulatory networks (GRNs). The Sonnhammer group has extensive experience in GRN inference and has developed several algorithms to improve the reliability of the GRNs inferred from perturbations. The toolkit includes the GeneSpider package for GRN and data generation, which is used for GRN inference benchmarking with controlled network and data properties. The NestBoot GRN inference algorithm was devised to control the false discovery rate of network links.

The project aims to improve existing methods to make them faster and even more reliable. They will be applied to perturbation data from ENCODE and in-house data. The inferred GRNs will be analyzed for predictiveness and how well they replicate known links. The project involves programming, data analysis, benchmarking, and application of the developed methods to experimental data generated by the group.

The successful candidate must be highly motivated and have an M.Sc. in bioinformatics or related field, and knowledge of molecular biology. Alternatively, an M.Sc. in molecular biology or related field and at least 1 year of documented practical experience in bioinformatics research and programming. Demonstrable familiarity with sequence and molecular data analysis techniques is essential. Computer programming with Matlab, Python, R, (Perl, C++, Java), UNIX skills, and knowledge of biological database systems are necessary merits. Qualification requirements

In order to meet the general entry requirements, the applicant must have completed a second-cycle degree, completed courses equivalent to at least 240 higher education credits, of which 60 credits must be in the second cycle, or have otherwise acquired equivalent knowledge in Sweden or elsewhere.

In order to meet the specific entry requirements, for acceptance in the Biochemistry program the applicant must have passed courses within the first and second cycles of at least 120 credits in Biochemistry/Life Science, including at least 15 credits Biochemistry at the second cycle level and a Degree Project (thesis) also in Biochemistry of 30 credits.

The selection among the eligible candidates will be based on their capacity to successfully complete the program. Important criteria when assessing this capacity are; documented knowledge and skill in the field of the thesis project, written and oral proficiency in English, the capacity for analytical thinking, the ability to collaborate, as well as creativity, initiative, and independence.

The assessment will be based on previous experience and grades, the quality of the degree project, references, relevant experience, interviews and the candidate’s written motivation for seeking the position.

The term of the initial contract may not exceed one year. The employment may be extended for a maximum of two years at a time. However, the total period of employment may not exceed the equivalent of four years of full-time study. Doctoral students should primarily devote themselves to their own education, but may engage in teaching, research, and administration corresponding to a maximum of 20 % of a full-time position.

General information about the PhD programs can be given by the Director of Doctoral Studies, Pia delroth, or the Head of the Department, Lena Mler,

Apply for the PhD student position at Stockholm University’s recruitment system by clicking the “Apply” button. It is the responsibility of the applicant to ensure that the application is complete in accordance with the instructions in the job advertisement, and that it is submitted before the deadline.
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